PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 520aa    MW: 57087.7 Da    PI: 9.4973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0590112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016475004.1  90 FVCEICNKGFQRDQNLQLHRRGH 112
                     89*******************88 PP

2zf-C2H215.64.7e-05166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H++t+
  XP_016475004.1 166 WKCDKCSKKYAVQSDWKAHQKTC 188
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-589112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-889112No hitNo description
PROSITE profilePS5015710.94990112IPR007087Zinc finger, C2H2
PfamPF121718.3E-590112IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01790112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM0035577131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-8161187No hitNo description
SMARTSM0035594166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSNISGEEGS FSSGNTGEEV QKHNQAAHLK TSNNISSITS TSNGSSSQSQ QQQNKHQPLA  60
KKKRNLPGTP DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  120
RTTTEVRKRV YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD  180
WKAHQKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQSLMN NMDPNLQSGQ  240
MHVLMSSNAS LGLSDFNNFD PKTPLKSLPQ ELLPIPFKSM NNNMAAGGMF STTSGNLFGS  300
PRSVASSSSG LQLSSNIPSN FNYLQDSSKN GTVQGQAPMS ATALLQKAAQ MGATASGSIN  360
SPMMQKSFVT SAMAGPYVSP SPYENFQTQP DNNRPSLAAV MNDMGMYSGI LMSNDQNING  420
GFVKNVAEHD QENNNTNDSS SVIRVRNQST VFGHNGNNDM LTVDFLGVGG SSRPPSLHEQ  480
QRLEAAINQQ RMQASAINPF HQQNISHGNN SAMEKPIWDV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-133HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475004.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-119IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLK4CV550.0K4CV55_SOLLC; Uncharacterized protein
STRINGSolyc09g074780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2